Main Menu	Submenus		Function
File	New Open Add Close		Create a new untitled document. Open RSM scripts, "pdb" and "cif" files. Add an RSM script to the current world, see '`add`' command Close the current document.
	Save Save as Save Mol. as		Save the current document if modified. Save the document as an RSM script, see command '`save`'. Save the active molecule as an RSM script.
	Load mol. file		Load a molecular file into the current world, see the RasMol command '`load`'. Depending on the status of the connect mode, the connectivity information is loaded or ignored.
	Load script		See RasMol '`script`' command. Most scripts have the extension <.src>, main scripts have sometimes the extension <.top>.
	Export		Image Molecular file Script data	See the RasMol '`write`' command. See the RasMol '`save`' command. See the RasMol '`write script`' command. Note that the most formats to export image files are not supported in the 32-bits version. The clipboard is often a simpler method.
	Print Print setup		Print the current view. If the view is larger than the page, the image is resized.
	Preferences Load Prefs		See Preferences. Load a new preference file
	Exit		Exit program.
Edit	Copy		Image	Copy a bipmap file <*.bmp> to the clipboard. See also preferences for the zoom factor.
	Copy		Selection Position	Copy the current atom selection or the spatial position to the clipboard. See specific clipboard formats and the '`copy`' command.
	Paste			Paste the current atom selection or spatial position from the clipboard. See specific clipboard formats and the RasTop specific '`paste`' command.
	Select		All Inverse Previous	Select all atoms. Inverse the current selection. Return to the previous selection. If the picking mode is on, return to the initial selection.
	Select		Expression Within	See the RasMol '`select`' command. See the RasMol '`select within`' command.
		Show	Show the current selection on screen. See RasMol parameter '`display`'.
		Edit	Atoms Groups Chains Coordinates	Edit atoms, groups, chains, or atom coordinates of the current selection as a text file that can be exported.
		Pick	Atoms Groups Chains Center	See picking mode.
		Mode	Internal Bonds Hydrogens Heteroatoms Models	See the parameter '`bond modes and/or`' See the internal parameter '`hydrogen`'. See the internal parameter '`hetero`'. Control the selection of atoms when several models are opened. If '`models`' is on, atom selection will occur in all models simultaneously.
	Define		See the RasMol command '`define`', and the atom set box.
	Restrict		See the RasMol command '`restrict`'.
	Command		Open a dialog box to enter RasMol script command manually.
Molecule	Delete Molec.		Delete the active molecule, see '`zap molecule`' command .
	Information		Molecule World Atom Selection Group Selection Chain Selection Coordinates	See the command '`show`'.
	Sequence		See the RasMol command '`show`'.
	Molecular file		Edit the molecular file.
	Symmetry Phi psi angles Ramachandran		See the RasMol command '`show`'.
	Hide or Show		Hide or show the active molecule, see '`molecule`' command.
	Structure		Calculate Renumber Connect Cis angle	See the RasMol command '`structure`'. See the RasMol command '`renumber`'. See the RasMol command '`connect`'. See the RasMol parameter '`cis angle`'.
	Structure		Connect Mode	See the RasMol command '`connect`'. If the connect mode is false when loading a molecular file, RasTop uses the connectivity information of the input file.
	Monitors		Add/Remove Remove all Show values	Add and remove monitors, see picking mode. See the RasMol command '`monitor off`'. See the RasMol parameter '`monitor`'.
	Axes & Boxes		Unit cell Bound box Axes World Axes	See the RasMol parameters '`unit cell`', '`bound box``'`, and`'axes'`.
	Centre See the command '`centre`'		Selection World Origin Origin to centre Centre to origin	Center to selected atoms Center world to center of canvas Center to world origin Transfer world origin to current center. Transfer current center to world origin. Molecules are translated.
	Rotate		See the RasMol command 'rotate'.
Atoms	Spacefill See the RasMol commands '`spacefill`' and '`star`'.		Display Remove Display only	Display spacefill in the current selection. Remove spacefill from the current selection Display only spacefill in the selection.
			Sphere Star	Spacefilling using spheres. Spacefilling using stars.
			Fixed Radius Van der Waals Temperature User	Radius of fixed value. Van der Waals radius. Radius according to temperature User defined radius.
	Labels		Display Remove Pick	Display labels on all selected atoms. Remove labels from all selected atoms. See picking mode.
			residues	Label each selected group.
			Format	Format the labeling. See the RasMol parameters '`font stroke`' and '`fontsize`'.
	Color		CPK Shapely Structure Group Chain Temperature Charge User Model Alternate	Color the spacefilling. See the RasMol command '`colour`'. Atom color controls the color of labels, monitors, bonds and ribbonds when the none color is selected for these elements, see color palette.
Bonds	Bonds See the RasMol commands 'wireframe' and 'dash'.		Display Remove Display only	Display all bonds. Remove all bond representations. Display only bonds.
			Reset	Reset bonds, see '`reset`' command.
			Type	Wire Dash Cylinder	Display bonds with wires. Display bonds with dashed lines. Display bonds with cylinders.
			Mode	None Not bonded All	Control the spacefill representation of single atoms that are not bonded. See the RasMol parameter 'set bondmode'.
			Multiple bonds	Add/Remove Show	See picking mode. Activate or disable multiple bonds representation.
	H bonds See the RasMol command '`Hbonds`.		Display Remove	Display selected H bonds Remove selected H bonds.
			Type	Dash Cylinder	Control representation.
			Mode	Sidechain Backbone	Control binding to backbone. See the RasMol parameter '`Hbonds`'.
			Color	Type	See the RasMol parameter '`color Hbonds`'.
	SS bonds See the RasMol command '`SSbonds`.		Display Remove	Display selected SS bonds Remove selected SS bonds.
			Type	Dash Cylinder	Control representation.
			Mode	Sidechain Backbone	Control binding to backbone. See the RasMol parameter '`SSbonds`'.
Ribbons	Display Remove Display only		Display, remove, or display only a ribbon representation in the current selection. The ribbon mode is chosen among the five following options: '`ribbons`', `'strands`', `'cartoon`', '`trace`, and '`backbone`'. Different from RasMol, the backbone representation cannot be displayed simultaneously with an other ribbon representation. Nevertheless, this is accomplished by entering the scripting information manually.
	Ribbons Strands Cartoons Trace Backbone		Set the current ribbon representation. See the RasMol commands '`ribbons`', `'strands`', `'cartoon`', '`trace`', and '`backbone`'.
	Settings		Beta arrows Dash Dots Height Radius Strand number Structure Temperature Width Wire	Possible options are highlighted according to the possibilities of the current ribbon representation. See the RasMol command '`set cartoon`', `ribbons`', `strands`', `cartoon`, '`trace`', and '`backbone`'.
Envelops	Display dots Remove dots		Display or remove dots in the current selection. See the RasMol command '`dots`'. To select all dots, i.e. all atoms represented with dots, select the dot envelop in the atom sets box and click the adjacent "new" icon.
	Van der Waals Conolly		Control the display of a van der Waals or a solvent accessible surface around the currently selected set of atoms. See the RasMol parameters '`radius`' and '`solvent`'.
	Dot size Radius size Dot density		See the RasMol parameter '`dot <value>`'. See the RasMol parameter '`radius`'. See the RasMol command '`dots <value>`'.
	Potential		See the RasMol colour scheme on potential.
View	Light Source Backgrd fade		See the RasMol parameter '`set headlight`'. See the RasMol parameter '`backfade`'.
	Stereo Stereo Angle		See the RasMol parameter '`stereo`'.
	Shadows		See the RasMol parameter '`shadow`'. Not active in version 2.0
	Reset Depth		See the RasMol parameters '`depth`' and '`reset`'.
	Reset Slab		See the RasMol parameters '`slab`' and '`reset`'.
	Slab Mode		Reject Half Hollow Solid Section	See the RasMol parameter '`slabmode`'.
Window	Tile Tile Horizontal Tile Vertical Cascade Arrange		Tile all graphic windows with a length/width ratio close to unity. Tile all graphic windows horizontally. Tile all graphic windows vertically. Cascade all graphic windows. Arrange iconic graphic windows.
	Main Toolbar Select Toolbar Color Picker Command Pan. Status Bar		Toggle the main toolbar. Toggle the selection toolbar. Toggle the color picker. Toggle the command panel. Toggle the status bar.
	Full screen		Toggle all visible toolbars together.
Help	Help RasTop		Start your default browser and open this site. The location of the RasTop Help Site must be entered in the preferences to activate this command.

RasTop 2.0 Help Home | About | Copyrights | Notice | Using | Programs | Library

RasTop 2.0 Help
Home | About | Copyrights | Notice | Using | Programs | Library